TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sel 0   selenoprotein O homolog [Ectocarpus siliculosus]
         (672 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649733.1| Ectocarpus siliculosus strain Ec 32, whole genom...   337   8e-92
emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genom...    64   3e-09

>emb|FN649733.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG08
          Length = 4529048

 Score =  337 bits (865), Expect = 8e-92
 Identities = 177/177 (100%), Positives = 177/177 (100%)
 Frame = -2

Query: 1       MSLASAVTSSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAA 60
               MSLASAVTSSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAA
Sbjct: 2914477 MSLASAVTSSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAA 2914298

Query: 61      TAAAATASVSHSNRNDRVVTARPASRTAMSTAVDAAATCSSSTLDTLPFDNRVIRELPVD 120
               TAAAATASVSHSNRNDRVVTARPASRTAMSTAVDAAATCSSSTLDTLPFDNRVIRELPVD
Sbjct: 2914297 TAAAATASVSHSNRNDRVVTARPASRTAMSTAVDAAATCSSSTLDTLPFDNRVIRELPVD 2914118

Query: 121     PITDNYVRRVENACFSIVAPDPVVKPVMVAASNSALGLLGLAAEEGQREDAAEYFSG 177
               PITDNYVRRVENACFSIVAPDPVVKPVMVAASNSALGLLGLAAEEGQREDAAEYFSG
Sbjct: 2914117 PITDNYVRRVENACFSIVAPDPVVKPVMVAASNSALGLLGLAAEEGQREDAAEYFSG 2913947



 Score =  153 bits (386), Expect = 3e-36
 Identities = 70/71 (98%), Positives = 71/71 (100%)
 Frame = -1

Query: 361     YEEAVRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDGG 420
               YEEAVRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDGG
Sbjct: 2910302 YEEAVRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDGG 2910123

Query: 421     GRYSYERQPEM 431
               GRYSYERQPE+
Sbjct: 2910122 GRYSYERQPEV 2910090



 Score =  141 bits (355), Expect = 1e-32
 Identities = 70/77 (90%), Positives = 71/77 (92%)
 Frame = -3

Query: 284     GNVIQERASIVTRLAPTFLRFGSFEIFKPRDPRTGRDGPSAGNDALRLQMLEYAIGRFFP 343
               G V +    IVTRLAPTFLRFGSFEIFKPRDPRTGRDGPSAGNDALRLQMLEYAIGRFFP
Sbjct: 2911185 GTVPEPHT*IVTRLAPTFLRFGSFEIFKPRDPRTGRDGPSAGNDALRLQMLEYAIGRFFP 2911006

Query: 344     GAAAAGPEGSKARYLAM 360
               GAAAAGPEGSKARYLAM
Sbjct: 2911005 GAAAAGPEGSKARYLAM 2910955



 Score =  128 bits (321), Expect = 1e-28
 Identities = 60/60 (100%), Positives = 60/60 (100%)
 Frame = -3

Query: 613     EAIEDAEKGDFSGVQRVLRLLESPYDPPADDGEGSSSPGGKDYLRATPDWAADLVCTCSS 672
               EAIEDAEKGDFSGVQRVLRLLESPYDPPADDGEGSSSPGGKDYLRATPDWAADLVCTCSS
Sbjct: 2903841 EAIEDAEKGDFSGVQRVLRLLESPYDPPADDGEGSSSPGGKDYLRATPDWAADLVCTCSS 2903662



 Score =  105 bits (263), Expect = 5e-22
 Identities = 55/65 (84%), Positives = 58/65 (89%)
 Frame = -1

Query: 229     GLTPYSRSADGRKVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQ 288
               G  P+ RS    +VLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQ
Sbjct: 2911796 GTHPFPRSPS--QVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQ 2911623

Query: 289     ERASI 293
               ERAS+
Sbjct: 2911622 ERASV 2911608



 Score =  103 bits (256), Expect = 3e-21
 Identities = 45/45 (100%), Positives = 45/45 (100%)
 Frame = -1

Query: 177     GNKLMPGAQPHAHAYCGHQFGSFAGQLGDGAAMYLGEVEGPSGRW 221
               GNKLMPGAQPHAHAYCGHQFGSFAGQLGDGAAMYLGEVEGPSGRW
Sbjct: 2913446 GNKLMPGAQPHAHAYCGHQFGSFAGQLGDGAAMYLGEVEGPSGRW 2913312



 Score = 96.3 bits (238), Expect = 4e-19
 Identities = 51/69 (73%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
 Frame = -1

Query: 407     FFDPKFVPNGSDGGGRYSYERQ--PEMCKWNLHKFAEAVAPALPLSDSTAALEKYDGLFK 464
               FF P   P  +   GR    R   P MCKWNLHKFAEAVAPALPLSDSTAALEKYDGLFK
Sbjct: 2909627 FFFPHVCPIHAHVCGRGHILRYTVP*MCKWNLHKFAEAVAPALPLSDSTAALEKYDGLFK 2909448

Query: 465     GYYEEGMRR 473
               GYYEEGMRR
Sbjct: 2909447 GYYEEGMRR 2909421



 Score = 94.0 bits (232), Expect = 2e-18
 Identities = 47/53 (88%), Positives = 48/53 (90%)
 Frame = -1

Query: 525     LAAQCAGPKIKAKALRRAVDIGRPSIPPQQLQGLWAMAQENPEALAQRFSAPK 577
               LA     P+IKAKALRRAVDIGRPSIPPQQLQGLWAMAQENPEALAQRFSAPK
Sbjct: 2906537 LARTPDNPQIKAKALRRAVDIGRPSIPPQQLQGLWAMAQENPEALAQRFSAPK 2906379



 Score = 81.3 bits (199), Expect = 1e-14
 Identities = 39/41 (95%), Positives = 41/41 (100%)
 Frame = -3

Query: 473     RKLGLFSVEEDDDGLFESLFATMADTSADFTGTFRELAQLV 513
               RKLGLFSVEEDDDGLFESLFATMADTSADFTGTFRELAQ++
Sbjct: 2908767 RKLGLFSVEEDDDGLFESLFATMADTSADFTGTFRELAQVI 2908645



 Score = 68.9 bits (167), Expect = 7e-11
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = -1

Query: 577     KDAVIAELREEMQKLSNYDAAQQRLKDMEALEEDG 611
               +DAVIAELREEMQKLSNYDAAQQRLKDMEALEEDG
Sbjct: 2905904 QDAVIAELREEMQKLSNYDAAQQRLKDMEALEEDG 2905800



 Score = 55.5 bits (132), Expect = 8e-07
 Identities = 25/32 (78%), Positives = 30/32 (93%)
 Frame = -3

Query: 511     QLVPGGDVDAVSKALAAQCAGPKIKAKALRRA 542
               QLVPGGDVDAVSKALAAQCAGPK++A + +R+
Sbjct: 2907513 QLVPGGDVDAVSKALAAQCAGPKVRAASKKRS 2907418



 Score = 52.0 bits (123), Expect = 9e-06
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -2

Query: 220     RWEIQFKGAGLTPYSRSADGRKV 242
               RWEIQFKGAGLTPYSRSADGRKV
Sbjct: 2912338 RWEIQFKGAGLTPYSRSADGRKV 2912270


>emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG16
          Length = 8064047

 Score = 63.5 bits (153), Expect = 3e-09
 Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 17/104 (16%)
 Frame = +1

Query: 128    RRVENACFSIVAPDPVVKPVMVAASNSALGLLGLAAE------------EG-----QRED 170
              R V NAC++ V+ D    P +V  S +A  L G+  E            EG     Q + 
Sbjct: 483526 REVRNACYAFVSLDSAPDPKVVILSKTAAALTGIPLEFVGATRRENQGAEGAFPPCQLKQ 483705

Query: 171    AAEYFSGNKLMPGAQPHAHAYCGHQFGSFAGQLGDGAAMYLGEV 214
               A   +G   + GAQP + +Y GHQFG++AGQLGDG    LGE+
Sbjct: 483706 VALALTGTVGLEGAQPFSSSYGGHQFGNWAGQLGDGRVATLGEI 483837



 Score = 55.5 bits (132), Expect = 8e-07
 Identities = 22/37 (59%), Positives = 31/37 (83%)
 Frame = +2

Query: 365    VRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGP 401
              +++TA +VA WQ +GF HGVLNTDN ++LGL +D+GP
Sbjct: 486230 MQATARMVAGWQAMGFCHGVLNTDNFTLLGLGLDFGP 486340


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,571,322
Number of Sequences: 35
Number of extensions: 3297223
Number of successful extensions: 53813
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 7286
Number of HSP's gapped (non-prelim): 50732
length of query: 672
length of database: 65,311,373
effective HSP length: 120
effective length of query: 552
effective length of database: 65,307,173
effective search space: 36049559496
effective search space used: 36049559496
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)